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MGD Home > Contig Databases

Unigene Database
Contig
EST Database
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Contig Databases contain information about sequence, assemble detail and BLAST results. In Unigene databases, we even offer extra information such as EST member distribution and annotation table.


  What is Contig?

The need for the original use of the word contig has not diminished, but the current diversity of uses is causing confusion. Here we explain the origins of the term. The Sanger shotgun sequencing method relies on using computer programs to find matches to order sets of overlapping clones (Staden,R. "A strategy of DNA sequencing employing computer programs", Nucleic Acids Res. 7, 2601-2610, 1979). To aid discussion of this new class of object the word contig was invented (Staden,R. "A new computer method for the storage and manipulation of DNA gel reading data", Nucleic Acids Res. 8, 3673-3694 (1980)).   »Read More


  Contig Databases

  • Unigene Contig Database

  • Whole Genome Shotgun Contig Database & Supercontig Database

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      Related Links

    Nucleotide Sequence Databases
    - NCBI
    - EBI
    - DDBJ

    Protein Sequence Databases
    - SWISS-PROT & TrEMBL
    - PIR

    BLAST Services
    - BLAST @ NCBI
    - PSI-BLAST @ NCBI

    Protein Domain Families and Motifs
    - interpro
    - PROSITE
    - Pfam

    Journals
    - NCBI PubMed
    - Bioinformatics